Each table row shows performance measurements for this program with a particular command-line input value N.
N | CPU secs | Elapsed secs | Memory KB | Code B | ≈ CPU Load |
---|
Read the ↓ make, command line, and program output logs to see how this program was run.
Read benchmark to see what this program should do.
# The Computer Language Benchmarks Game # http://benchmarksgame.alioth.debian.org/ # # submitted by Ian Osgood # modified by Sokolov Yura # modified by bearophile # 2to3 from sys import stdin def gen_freq(seq, frame, frequences): ns = len(seq) + 1 - frame frequences.clear() for ii in range(ns): nucleo = seq[ii:ii + frame] if nucleo in frequences: frequences[nucleo] += 1 else: frequences[nucleo] = 1 return ns, frequences def sort_seq(seq, length, frequences): n, frequences = gen_freq(seq, length, frequences) l = sorted(list(frequences.items()), reverse=True, key=lambda seq_freq: (seq_freq[1],seq_freq[0])) print '\n'.join("%s %.3f" % (st, 100.0*fr/n) for st,fr in l) print def find_seq(seq, s, frequences): n,t = gen_freq(seq, len(s), frequences) print "%d\t%s" % (t.get(s, 0), s) def main(): frequences = {} for line in stdin: if line[0:3] == ">TH": break seq = [] for line in stdin: if line[0] in ">;": break seq.append( line[:-1] ) sequence = "".join(seq).upper() for nl in 1,2: sort_seq(sequence, nl, frequences) for se in "GGT GGTA GGTATT GGTATTTTAATT GGTATTTTAATTTATAGT".split(): find_seq(sequence, se, frequences) main()
Wed, 28 Sep 2022 09:10:48 GMT COMMAND LINE: /usr/bin/pyston knucleotide.pyston 0 < knucleotide-input10000.txt PROGRAM FAILED PROGRAM OUTPUT: File "knucleotide.pyston", line 28 print '\n'.join("%s %.3f" % (st, 100.0*fr/n) for st,fr in l) ^ SyntaxError: invalid syntax