Each table row shows performance measurements for this program with a particular command-line input value N.
N | CPU secs | Elapsed secs | Memory KB | Code B | ≈ CPU Load |
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# The Computer Language Benchmarks Game # http://benchmarksgame.alioth.debian.org/ # # modified by Ian Osgood # modified again by Heinrich Acker # modified by Justin Peel # 2to3 import sys, bisect alu = ( 'GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGG' 'GAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGA' 'CCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAAT' 'ACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCA' 'GCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGG' 'AGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCC' 'AGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA') iub = list(zip('acgtBDHKMNRSVWY', [0.27, 0.12, 0.12, 0.27] + [0.02]*11)) homosapiens = [ ('a', 0.3029549426680), ('c', 0.1979883004921), ('g', 0.1975473066391), ('t', 0.3015094502008), ] def genRandom(ia = 3877, ic = 29573, im = 139968): seed = 42 imf = float(im) while 1: seed = (seed * ia + ic) % im yield seed / imf Random = genRandom() def makeCumulative(table): P = [] C = [] prob = 0. for char, p in table: prob += p P += [prob] C += [char] return (P, C) def repeatFasta(src, n): width = 60 r = len(src) s = src + src + src[:n % r] for j in range(n // width): i = j*width % r print(s[i:i+width]) if n % width: print(s[-(n % width):]) def randomFasta(table, n): width = 60 r = range(width) gR = Random.next bb = bisect.bisect jn = ''.join probs, chars = makeCumulative(table) for j in range(n // width): x = jn([chars[bb(probs, gR())] for i in r]) print(x) if n % width: print(jn([chars[bb(probs, gR())] for i in range(n % width)])) def main(): n = int(sys.argv[1]) print('>ONE Homo sapiens alu') repeatFasta(alu, n*2) print('>TWO IUB ambiguity codes') randomFasta(iub, n*3) print('>THREE Homo sapiens frequency') randomFasta(homosapiens, n*5) main()
Fri, 30 Oct 2020 19:03:27 GMT COMMAND LINE: /usr/bin/mono /opt/ipy/ipy.exe fasta.ipy 2500000 PROGRAM FAILED PROGRAM OUTPUT: Cannot open assembly '/opt/ipy/ipy.exe': Adresář nebo soubor neexistuje.